It is very natural that you might invest or trade a variety of cryptocurrencies that are not present in CoinDCX Go.
While the amount of INR in your wallet will always be consistent on both platforms, your portfolio might significantly vary. This is because your portfolio on each platform only consists of tokens that are available on that platform. For example, a cryptocurrency X (not present in CoinDCX Go) that was purchased on CoinDCX will get added to your portfolio on CoinDCX but the same portfolio on CoinDCX Go will be of lower value since that cryptocurrency is not present on the platform.
You can always check the final and total worth of your portfolio on CoinDCX as it contains all the cryptocurrencies of CoinDCX Go.